STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_1993KEGG: lic:LIC11203 response regulator; PFAM: EAL domain protein; response regulator receiver; SMART: EAL domain protein; response regulator receiver. (399 aa)    
Predicted Functional Partners:
Snov_2342
Diguanylate cyclase with GAF sensor; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; GAF domain protein; KEGG: aca:ACP_1337 GAF domain/GGDEF domain protein; SMART: GGDEF domain containing protein; GAF domain protein.
 
 0.989
Snov_2495
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-4 domain protein; KEGG: met:M446_1844 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); SMART: GGDEF domain containing protein.
 
 0.989
Snov_0741
TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; PAS fold-4 domain protein; KEGG: ara:Arad_9978 sensory box/GGDEF family protein; SMART: GGDEF domain containing protein; PAS domain containing protein.
 
 0.987
Snov_1999
PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold domain protein; response regulator receiver; KEGG: bja:blr2287 two-component hybrid sensor and regulator; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; response regulator receiver.
 
 0.985
Snov_0962
KEGG: tgr:Tgr7_0082 Hpt sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver; Hpt domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver.
 
 0.984
Snov_2276
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-4 domain protein; KEGG: azc:AZC_2765 hypothetical protein; SMART: GGDEF domain containing protein.
 
 0.983
Snov_0634
TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain containing protein; KEGG: ara:Arad_8490 sensory box/GGDEF family protein; SMART: GGDEF domain containing protein.
  
 0.982
Snov_2223
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: mrd:Mrad2831_5530 diguanylate cyclase; SMART: GGDEF domain containing protein.
  
 0.981
Snov_2224
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: mrd:Mrad2831_5530 diguanylate cyclase; SMART: GGDEF domain containing protein.
  
 0.980
Snov_2604
Multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-4 domain protein; MHYT domain protein; histidine kinase A domain protein; response regulator receiver; KEGG: mch:Mchl_0272 PAS/PAC sensor hybrid histidine kinase; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; PAC repeat-containing protein; response regulator receiver.
 
 
 0.974
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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