STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_2026PFAM: alpha/beta hydrolase fold; KEGG: rpd:RPD_3289 alpha/beta hydrolase fold. (250 aa)    
Predicted Functional Partners:
Snov_2029
PFAM: Protein of unknown function DUF2327; KEGG: mes:Meso_1118 hypothetical protein.
 
     0.819
Snov_1583
PFAM: alpha/beta hydrolase fold; KEGG: pde:Pden_1042 alpha/beta hydrolase fold.
  
   
 0.736
Snov_2587
KEGG: bja:blr2202 hypothetical protein.
  
     0.734
Snov_1410
KEGG: xau:Xaut_1636 hypothetical protein.
  
     0.712
Snov_0227
PFAM: alpha/beta hydrolase fold; KEGG: jan:Jann_2938 alpha/beta hydrolase.
  
   
 0.689
Snov_3107
PFAM: protein of unknown function DUF1036; KEGG: azc:AZC_0444 hypothetical protein.
  
     0.682
Snov_3525
PFAM: alpha/beta hydrolase fold; KEGG: bpy:Bphyt_0479 alpha/beta hydrolase fold.
  
   
 0.680
Snov_0583
PFAM: Invasion associated locus B family protein; KEGG: xau:Xaut_4649 invasion associated locus B family protein.
  
     0.666
Snov_0067
KEGG: xau:Xaut_1466 hypothetical protein.
  
     0.616
Snov_3931
KEGG: azc:AZC_3715 hypothetical protein.
  
     0.592
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.