Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Snov_2032 | Snov_2033 | Snov_2032 | Snov_2033 | KEGG: bja:blr1420 flavin dependant oxidoreductase; TIGRFAM: luciferase family oxidoreductase, group 1; PFAM: Luciferase-like, subgroup. | Delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family. | 0.408 |
Snov_2032 | Snov_2355 | Snov_2032 | Snov_2355 | KEGG: bja:blr1420 flavin dependant oxidoreductase; TIGRFAM: luciferase family oxidoreductase, group 1; PFAM: Luciferase-like, subgroup. | KEGG: bra:BRADO1333 hypothetical protein. | 0.417 |
Snov_2032 | Snov_3330 | Snov_2032 | Snov_3330 | KEGG: bja:blr1420 flavin dependant oxidoreductase; TIGRFAM: luciferase family oxidoreductase, group 1; PFAM: Luciferase-like, subgroup. | Amino acid adenylation domain protein; KEGG: pde:Pden_2564 enterobactin synthase subunit F; TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; phosphopantetheine-binding; Thioesterase. | 0.421 |
Snov_2032 | ffh | Snov_2032 | Snov_2766 | KEGG: bja:blr1420 flavin dependant oxidoreductase; TIGRFAM: luciferase family oxidoreductase, group 1; PFAM: Luciferase-like, subgroup. | Signal recognition particle protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Interaction with FtsY leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual componen [...] | 0.443 |
Snov_2033 | Snov_2032 | Snov_2033 | Snov_2032 | Delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family. | KEGG: bja:blr1420 flavin dependant oxidoreductase; TIGRFAM: luciferase family oxidoreductase, group 1; PFAM: Luciferase-like, subgroup. | 0.408 |
Snov_2033 | Snov_3330 | Snov_2033 | Snov_3330 | Delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family. | Amino acid adenylation domain protein; KEGG: pde:Pden_2564 enterobactin synthase subunit F; TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; phosphopantetheine-binding; Thioesterase. | 0.788 |
Snov_2355 | Snov_2032 | Snov_2355 | Snov_2032 | KEGG: bra:BRADO1333 hypothetical protein. | KEGG: bja:blr1420 flavin dependant oxidoreductase; TIGRFAM: luciferase family oxidoreductase, group 1; PFAM: Luciferase-like, subgroup. | 0.417 |
Snov_3330 | Snov_2032 | Snov_3330 | Snov_2032 | Amino acid adenylation domain protein; KEGG: pde:Pden_2564 enterobactin synthase subunit F; TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; phosphopantetheine-binding; Thioesterase. | KEGG: bja:blr1420 flavin dependant oxidoreductase; TIGRFAM: luciferase family oxidoreductase, group 1; PFAM: Luciferase-like, subgroup. | 0.421 |
Snov_3330 | Snov_2033 | Snov_3330 | Snov_2033 | Amino acid adenylation domain protein; KEGG: pde:Pden_2564 enterobactin synthase subunit F; TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; phosphopantetheine-binding; Thioesterase. | Delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family. | 0.788 |
ffh | Snov_2032 | Snov_2766 | Snov_2032 | Signal recognition particle protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Interaction with FtsY leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual componen [...] | KEGG: bja:blr1420 flavin dependant oxidoreductase; TIGRFAM: luciferase family oxidoreductase, group 1; PFAM: Luciferase-like, subgroup. | 0.443 |