STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_2057PFAM: integrase family protein; KEGG: nha:Nham_2470 phage integrase; Belongs to the 'phage' integrase family. (563 aa)    
Predicted Functional Partners:
Snov_2069
KEGG: mpo:Mpop_5450 hypothetical protein; TIGRFAM: phage terminase, small subunit, P27 family; PFAM: terminase small subunit putative P27.
 
   
 0.544
Snov_2063
KEGG: mes:Meso_1892 HNH endonuclease; PFAM: HNH endonuclease; SMART: HNH nuclease.
 
   
 0.530
Snov_2071
PFAM: tail tape measure protein TP901 core region; KEGG: avi:Avi_0873 methyl-accepting chemotaxis protein.
 
     0.510
Snov_2058
KEGG: rpt:Rpal_3975 phage portal protein, HK97 family; TIGRFAM: phage portal protein, HK97 family; PFAM: portal protein.
     
 0.478
Snov_2070
PFAM: Terminase; KEGG: rsp:RSP_2352 putative terminase large subunit / phage terminase.
 
   
 0.478
Snov_2059
KEGG: mes:Meso_1897 hypothetical protein.
       0.476
Snov_0081
Multi-sensor hybrid histidine kinase; KEGG: azc:AZC_3923 response regulator receiver; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; response regulator receiver; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver.
  
  
 0.428
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.