STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_2060KEGG: rsq:Rsph17025_1358 HK97 family phage prohead protease; TIGRFAM: phage prohead protease, HK97 family; PFAM: peptidase U35 phage prohead HK97. (168 aa)    
Predicted Functional Partners:
Snov_2061
KEGG: mpo:Mpop_5467 hypothetical protein; TIGRFAM: phage major capsid protein, HK97 family; PFAM: major capsid protein HK97.
  
 0.995
Snov_0705
KEGG: xau:Xaut_3155 HK97 family phage major capsid protein; TIGRFAM: phage major capsid protein, HK97 family; PFAM: major capsid protein HK97.
  
 0.972
Snov_2069
KEGG: mpo:Mpop_5450 hypothetical protein; TIGRFAM: phage terminase, small subunit, P27 family; PFAM: terminase small subunit putative P27.
 
   
 0.933
Snov_2070
PFAM: Terminase; KEGG: rsp:RSP_2352 putative terminase large subunit / phage terminase.
 
     0.930
Snov_0015
KEGG: bmj:BMULJ_04635 bacteriophage major capsid protein; TIGRFAM: phage major capsid protein, HK97 family; PFAM: major capsid protein HK97.
  
 0.928
Snov_2063
KEGG: mes:Meso_1892 HNH endonuclease; PFAM: HNH endonuclease; SMART: HNH nuclease.
 
     0.901
Snov_2058
KEGG: rpt:Rpal_3975 phage portal protein, HK97 family; TIGRFAM: phage portal protein, HK97 family; PFAM: portal protein.
 
   
 0.883
Snov_2071
PFAM: tail tape measure protein TP901 core region; KEGG: avi:Avi_0873 methyl-accepting chemotaxis protein.
 
     0.851
Snov_0711
KEGG: xau:Xaut_3161 TP901-1 family phage major tail protein; TIGRFAM: phage major tail protein, TP901-1 family; PFAM: Phage major tail protein, TP901-1, subfamily 1.
 
    0.789
Snov_0701
Phage portal protein, HK97 family; KEGG: azc:AZC_1109 phage portal protein; TIGRFAM: phage portal protein, HK97 family; PFAM: portal protein.
 
   
 0.787
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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