STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_2087PFAM: protein of unknown function DUF403; KEGG: azc:AZC_1817 hypothetical protein. (314 aa)    
Predicted Functional Partners:
Snov_2085
PFAM: protein of unknown function DUF404; protein of unknown function DUF407; KEGG: azc:AZC_1818 hypothetical protein.
  
 0.963
Snov_4376
Transglutaminase domain protein; KEGG: rpc:RPC_1706 transglutaminase-like; PFAM: transglutaminase domain protein; transglutaminase domain protein; SMART: transglutaminase domain protein.
  
 0.961
Snov_2088
Transglutaminase domain protein; KEGG: rpc:RPC_3159 transglutaminase-like; PFAM: transglutaminase domain protein; transglutaminase domain protein; SMART: transglutaminase domain protein.
  
 0.955
Snov_2089
PFAM: 20S proteasome A and B subunits; KEGG: rpt:Rpal_2468 20S proteasome A and B subunits.
 
    0.908
Snov_2273
Transglutaminase domain protein; KEGG: rru:Rru_A1847 transglutaminase-like; PFAM: transglutaminase domain protein; transglutaminase domain protein; SMART: transglutaminase domain protein.
  
 0.819
Snov_4375
PFAM: protein of unknown function DUF404; protein of unknown function DUF407; protein of unknown function DUF403; KEGG: xau:Xaut_0516 hypothetical protein.
 
  
0.752
Snov_2086
PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: mlo:mlr5029 hypothetical protein.
       0.749
Snov_2909
KEGG: rle:RL1406 putative transglutaminase family protein; PFAM: transglutaminase domain protein; SMART: transglutaminase domain protein.
 
  
 0.748
Snov_4374
Protein of unknown function DUF2126; KEGG: rpe:RPE_0086 transglutaminase domain-containing protein; PFAM: Protein of unknown function DUF2126; transglutaminase domain protein; transglutaminase domain protein; SMART: transglutaminase domain protein.
 
  
 0.602
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.