STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_2101PFAM: protein of unknown function DUF140; KEGG: azc:AZC_2213 hypothetical protein. (382 aa)    
Predicted Functional Partners:
Snov_2100
KEGG: met:M446_4934 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
 
 0.999
Snov_2099
PFAM: Mammalian cell entry related domain protein; KEGG: msl:Msil_2805 mammalian cell entry related domain protein.
 
 0.998
Snov_2098
PFAM: protein of unknown function DUF330; KEGG: xau:Xaut_4116 hypothetical protein.
 
  
 0.950
Snov_1995
Anti-sigma-factor antagonist; KEGG: mag:amb3519 anti-anti-sigma regulatory factor; TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Belongs to the anti-sigma-factor antagonist family.
   
   0.783
bamA
Outer membrane protein assembly complex, YaeT protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
 
     0.693
Snov_0351
KEGG: azc:AZC_3926 putative ABC transporter ATP-binding protein in NtrA/RpoN 5'region; PFAM: ABC transporter related; SMART: AAA ATPase.
 
  
  0.680
Snov_1096
PFAM: permease YjgP/YjgQ family protein; KEGG: azc:AZC_4325 putative permease precursor.
 
  
 0.539
Snov_3041
Protein TolR; KEGG: azc:AZC_0522 biopolymer transport protein; TIGRFAM: protein TolR; PFAM: Biopolymer transport protein ExbD/TolR.
  
  
 0.530
Snov_3184
KEGG: rle:pRL90044 putative transmembrane ABC transporter; PFAM: ABC transporter related; ABC-2 type transporter; SMART: AAA ATPase.
    
 0.521
Snov_2102
PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: rpb:RPB_1626 mandelate racemase/muconate lactonizing protein.
       0.468
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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