STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_2108PFAM: cytochrome c prime; KEGG: met:M446_1785 cytochrome c prime. (149 aa)    
Predicted Functional Partners:
Snov_2107
PFAM: cytochrome B561; KEGG: bid:Bind_0113 cytochrome b561.
 
    0.897
Snov_2106
PFAM: protein of unknown function DUF6 transmembrane; KEGG: xau:Xaut_3544 hypothetical protein.
       0.623
Snov_0969
PFAM: 5'-Nucleotidase domain protein; metallophosphoesterase; KEGG: xau:Xaut_1519 5'-nucleotidase domain-containing protein; Belongs to the 5'-nucleotidase family.
     
  0.499
Snov_0321
PFAM: Protein of unknown function DUF2244, transmembrane; KEGG: azc:AZC_3683 hypothetical protein.
  
     0.495
Snov_2109
PFAM: UspA domain protein; KEGG: rce:RC1_1878 universal stress protein family.
       0.470
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.