STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_2126PFAM: HI0933 family protein; KEGG: ccs:CCNA_01545 NAD(FAD)-utilizing dehydrogenase. (389 aa)    
Predicted Functional Partners:
Snov_2125
TIGRFAM: lysine 2,3-aminomutase YodO family protein; KEGG: azc:AZC_2928 putative lysine 2,3-aminomutase; PFAM: Radical SAM domain protein.
       0.737
Snov_2122
PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; KEGG: rpt:Rpal_4320 4-diphosphocytidyl-2C-methyl-D-erythritol synthase.
       0.524
Snov_2123
KEGG: azc:AZC_2930 putative xanthine and CO dehydrogenases maturation factor.
       0.524
Snov_2124
PFAM: protein of unknown function DUF182; KEGG: azc:AZC_2929 XdhC family protein.
       0.524
Snov_2428
PFAM: protein of unknown function DUF188; KEGG: xau:Xaut_2540 hypothetical protein; Belongs to the UPF0178 family.
 
     0.405
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.