STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_2192PFAM: VacJ family lipoprotein; KEGG: gbe:GbCGDNIH1_0205 lipoprotein. (264 aa)    
Predicted Functional Partners:
Snov_1099
Porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.
   
 
 0.732
Snov_4077
Porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.
   
 
 0.732
Snov_2193
KEGG: hypothetical protein.
       0.581
Snov_2194
KEGG: rce:RC1_0813 hypothetical protein.
       0.581
Snov_2191
KEGG: csa:Csal_0395 cation diffusion facilitator family transporter; TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein.
       0.411
Snov_2822
Ferric uptake regulator, Fur family; PFAM: ferric-uptake regulator; KEGG: azc:AZC_4579 putative Fe2+/Zn2+ uptake regulation protein; Belongs to the Fur family.
  
    0.404
Snov_2007
KEGG: rce:RC1_0358 HlyD family secretion protein; TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein.
 
   
 0.402
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.