STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_2204Hypothetical protein; KEGG: rru:Rru_A3567 uroporphyrinogen III synthase HEM4. (479 aa)    
Predicted Functional Partners:
Snov_2205
PFAM: Cobyrinic acid ac-diamide synthase; KEGG: pna:Pnap_4167 cobyrinic acid a,c-diamide synthase.
       0.773
Snov_2206
PFAM: acriflavin resistance protein; KEGG: rce:RC1_0814 heavy metal efflux pump, CzcA family protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
       0.586
Snov_2207
PFAM: ABC-3 protein; KEGG: app:CAP2UW1_4082 ABC-3 protein.
       0.556
Snov_2208
PFAM: periplasmic solute binding protein; KEGG: app:CAP2UW1_4081 periplasmic solute binding protein.
       0.556
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.