STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_2255PFAM: MltA-interacting MipA family protein; KEGG: azc:AZC_1663 hypothetical protein. (286 aa)    
Predicted Functional Partners:
Snov_1648
KEGG: azc:AZC_1545 hypothetical protein.
  
     0.611
Snov_2258
PFAM: conserved hypothetical protein; KEGG: azc:AZC_1659 hypothetical protein.
 
     0.606
Snov_2256
PFAM: Phosphoglycerate mutase; KEGG: met:M446_6214 putative phosphohistidine phosphatase, SixA.
 
     0.560
Snov_2257
PFAM: protein of unknown function DUF463 YcjX family protein; KEGG: azc:AZC_1660 YcjX-like family protein.
       0.503
Snov_1099
Porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.
  
     0.500
Snov_4028
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: xau:Xaut_2030 xylose isomerase domain-containing protein.
  
     0.496
Snov_3845
PFAM: protein of unknown function DUF1150; KEGG: azc:AZC_0347 hypothetical protein.
  
     0.491
Snov_2098
PFAM: protein of unknown function DUF330; KEGG: xau:Xaut_4116 hypothetical protein.
  
     0.484
Snov_3800
PFAM: Protein of unknown function DUF2159, secreted; KEGG: azc:AZC_0568 hypothetical protein.
  
     0.482
Snov_1498
PFAM: branched-chain amino acid transport; KEGG: azc:AZC_1600 hypothetical protein.
  
     0.480
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.