STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_2303KEGG: azc:AZC_0408 hypothetical protein. (275 aa)    
Predicted Functional Partners:
Snov_4446
PFAM: protein of unknown function DUF1194; KEGG: xau:Xaut_4135 hypothetical protein.
  
    0.634
Snov_1691
KEGG: bpt:Bpet4671 molybdopterin-guanine dinucleotide biosynthesis protein B; TIGRFAM: molybdopterin-guanine dinucleotide biosynthesis protein B; PFAM: molybdopterin-guanine dinucleotide biosynthesis MobB region.
 
     0.457
Snov_2302
KEGG: azc:AZC_0740 putative Zn-dependent hydrolase.
  
  
 0.454
Snov_3401
PFAM: Protein of unknown function DUF2125; KEGG: xau:Xaut_0016 hypothetical protein.
  
     0.445
Snov_4129
PFAM: protein of unknown function DUF1236; KEGG: azc:AZC_3141 hypothetical protein.
  
     0.404
Snov_2094
PFAM: Usg family protein; KEGG: xau:Xaut_4266 Usg family protein.
  
     0.403
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.