STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_2310KEGG: xau:Xaut_1326 PhzF family phenazine biosynthesis protein; TIGRFAM: phenazine biosynthesis protein PhzF family; PFAM: Phenazine biosynthesis PhzC/PhzF protein. (298 aa)    
Predicted Functional Partners:
Snov_2311
TIGRFAM: pyridoxal kinase; KEGG: azc:AZC_1064 pyridoxamine kinase; PFAM: PfkB domain protein; Belongs to the pyridoxine kinase family.
       0.791
Snov_2309
PFAM: NUDIX hydrolase; KEGG: azc:AZC_1067 hypothetical protein.
       0.627
Snov_2312
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: sme:SM_b20523 hypothetical protein; SMART: GGDEF domain containing protein.
       0.508
Snov_2308
PFAM: basic membrane lipoprotein; KEGG: met:M446_3191 basic membrane lipoprotein.
       0.417
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.