STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_2386PFAM: protein of unknown function DUF477; KEGG: xau:Xaut_1670 hypothetical protein. (263 aa)    
Predicted Functional Partners:
Snov_2387
PFAM: protein of unknown function DUF477; KEGG: xau:Xaut_1671 hypothetical protein.
     0.974
Snov_2385
PFAM: LemA family protein; KEGG: azc:AZC_2562 LemA protein.
 
  
 0.948
Snov_2478
Cytochrome b/b6 domain protein; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
    
   0.846
Snov_1289
TIGRFAM: arsenite oxidase, small subunit; KEGG: xau:Xaut_3949 arsenite oxidase small subunit; PFAM: Rieske [2Fe-2S] iron-sulphur domain.
  
   0.746
Snov_2479
Ubiquinol-cytochrome c reductase, iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
  
   0.746
Snov_1015
KEGG: rba:RB4417 cytochrome-c oxidase chain II/c precursor; TIGRFAM: cytochrome c oxidase, subunit II; PFAM: cytochrome c oxidase subunit II; cytochrome c class I.
   
   0.727
Snov_0584
Cytochrome c oxidase, subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
    
   0.721
Snov_0585
Cytochrome c oxidase, subunit I; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B.
    
   0.721
Snov_1016
TIGRFAM: cytochrome c oxidase, subunit I; KEGG: noc:Noc_1766 cytochrome c oxidase; PFAM: cytochrome c oxidase subunit I; Belongs to the heme-copper respiratory oxidase family.
    
   0.721
Snov_4240
PFAM: cytochrome c oxidase subunit II; KEGG: mlo:mlr1039 cytochrome c oxidase subunit II.
    
   0.721
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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