STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_2387PFAM: protein of unknown function DUF477; KEGG: xau:Xaut_1671 hypothetical protein. (209 aa)    
Predicted Functional Partners:
Snov_2386
PFAM: protein of unknown function DUF477; KEGG: xau:Xaut_1670 hypothetical protein.
     0.974
Snov_2385
PFAM: LemA family protein; KEGG: azc:AZC_2562 LemA protein.
 
     0.934
ilvD-2
TIGRFAM: dihydroxy-acid dehydratase; KEGG: mpo:Mpop_2797 dihydroxy-acid dehydratase; PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase; Belongs to the IlvD/Edd family.
       0.561
Snov_2389
PFAM: PhnA protein; KEGG: avi:Avi_5247 alkylphosphonate uptake protein.
 
     0.551
Snov_2384
PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: mlo:mlr8433 hypothetical protein.
       0.485
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.