STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_2425Formamidase; KEGG: azc:AZC_4101 formamidase; PFAM: Acetamidase/Formamidase. (409 aa)    
Predicted Functional Partners:
Snov_3272
D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein; Catalyzes the NAD(+)-dependent oxidation of formate to carbon dioxide. Formate oxidation is the final step in the methanol oxidation pathway in methylotrophic microorganisms. Has a role in the detoxification of exogenous formate in non-methylotrophic organisms. Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. FDH subfamily.
  
 
  0.912
Snov_3713
PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: azc:AZC_0072 putative amidohydrolase.
    
 0.902
Snov_1175
Formamidase; KEGG: oca:OCAR_7088 formamidase; PFAM: Acetamidase/Formamidase.
  
  
 
0.901
Snov_1310
TIGRFAM: bicupin, oxalate decarboxylase family; KEGG: atc:AGR_L_224 putative oxalate decarboxylase; PFAM: Cupin domain protein.
    
  0.901
Snov_3533
TIGRFAM: bicupin, oxalate decarboxylase family; KEGG: atc:AGR_L_224 putative oxalate decarboxylase; PFAM: Cupin domain protein.
    
  0.901
Snov_0337
Glutamate--putrescine ligase; KEGG: azc:AZC_4442 glutamine synthetase family protein; PFAM: glutamine synthetase catalytic region.
     
  0.900
Snov_0403
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: azc:AZC_0682 putative nitrite reductase.
     
  0.900
Snov_0404
TIGRFAM: precorrin-3B synthase; KEGG: xau:Xaut_2499 ferredoxin-nitrite reductase; PFAM: nitrite and sulphite reductase 4Fe-4S region; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein.
     
 0.900
Snov_0414
KEGG: met:M446_4572 glutamate--ammonia ligase; PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp.
     
  0.900
Snov_0935
Glutamate--putrescine ligase; KEGG: azc:AZC_3648 putative glutamine synthetase protein; PFAM: glutamine synthetase catalytic region.
     
  0.900
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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