STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_2450Methyltransferase FkbM family; KEGG: azc:AZC_1190 methyltransferase; TIGRFAM: methyltransferase FkbM family; PFAM: Methyltransferase type 11. (277 aa)    
Predicted Functional Partners:
Snov_2241
PFAM: lipopolysaccharide biosynthesis protein; KEGG: azc:AZC_4423 hypothetical protein.
  
     0.758
Snov_2240
PFAM: polysaccharide biosynthesis protein; KEGG: azc:AZC_4424 hypothetical protein.
 
     0.740
Snov_1132
TIGRFAM: methyltransferase FkbM family; KEGG: acr:Acry_0294 FkbM family methyltransferase.
  
     0.723
Snov_2238
PFAM: Soluble ligand binding domain; polysaccharide export protein; KEGG: xau:Xaut_1959 polysaccharide export protein.
  
     0.595
Snov_3423
KEGG: xau:Xaut_1645 hypothetical protein.
  
     0.553
uvrC
Excinuclease ABC, C subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision.
       0.536
Snov_2237
KEGG: azc:AZC_4421 glycosyltransferase; TIGRFAM: glycosyl transferase, WecB/TagA/CpsF family; PFAM: glycosyl transferase WecB/TagA/CpsF; Belongs to the glycosyltransferase 26 family.
  
     0.525
Snov_2471
KEGG: xau:Xaut_2277 outer membrane autotransporter; TIGRFAM: outer membrane autotransporter barrel domain protein; PFAM: Autotransporter beta- domain protein.
  
     0.502
Snov_2449
PFAM: protein of unknown function DUF6 transmembrane; KEGG: swi:Swit_0562 hypothetical protein.
       0.444
Snov_1759
PFAM: Beta-ketoacyl synthase; Acyl transferase; Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KR domain protein; phosphopantetheine-binding; KEGG: azc:AZC_0036 putative fatty acid synthase transmembrane protein.
  
     0.434
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.