STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_2467PFAM: creatinase; peptidase M24; KEGG: mes:Meso_2153 peptidase M24. (383 aa)    
Predicted Functional Partners:
Snov_2468
KEGG: azc:AZC_3997 hypothetical protein.
       0.550
lgt
Prolipoprotein diacylglyceryl transferase; Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins; Belongs to the Lgt family.
     
 0.516
Snov_4154
PFAM: Asp/Glu/hydantoin racemase; KEGG: mlo:mlr7137 arylmalonate decarboxylase.
 
     0.506
Snov_2859
PFAM: Asp/Glu/hydantoin racemase; KEGG: bph:Bphy_7794 Asp/Glu/hydantoin racemase.
 
     0.476
Snov_2466
PFAM: protein of unknown function DUF152; KEGG: rpd:RPD_3877 hypothetical protein; Belongs to the multicopper oxidase YfiH/RL5 family.
       0.467
prs
Ribose-phosphate pyrophosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily.
 
 
   0.459
Snov_2465
PFAM: protein of unknown function DUF185; KEGG: rsh:Rsph17029_0231 hypothetical protein.
       0.454
Snov_3009
KEGG: gbe:GbCGDNIH1_0080 sarcosine oxidase alpha subunit; TIGRFAM: sarcosine oxidase, alpha subunit family; PFAM: glycine cleavage T protein (aminomethyl transferase); fumarate reductase/succinate dehydrogenase flavoprotein domain protein; Glycine cleavage T-protein barrel.
 
 
 0.448
Snov_1793
Transketolase central region; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.
  
 
 0.436
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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