STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_2486PFAM: protein of unknown function DUF1285; KEGG: xau:Xaut_2949 hypothetical protein. (195 aa)    
Predicted Functional Partners:
Snov_2485
PFAM: NUDIX hydrolase; KEGG: xau:Xaut_2950 NUDIX hydrolase.
       0.795
Snov_2483
PFAM: Polynucleotide adenylyltransferase region; KEGG: xau:Xaut_2952 polynucleotide adenylyltransferase region; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.
       0.794
Snov_2484
KEGG: azc:AZC_3506 hypothetical protein.
       0.794
Snov_2489
TIGRFAM: conserved hypothetical protein; KEGG: azc:AZC_3511 double-transmembrane region.
 
     0.590
Snov_2490
PFAM: protein of unknown function DUF1355; KEGG: xau:Xaut_2945 hypothetical protein.
 
     0.539
Snov_2488
PFAM: protein of unknown function DUF58; KEGG: xau:Xaut_2947 hypothetical protein.
 
     0.522
Snov_2487
PFAM: ATPase associated with various cellular activities AAA_3; KEGG: xau:Xaut_2948 ATPase.
       0.489
Snov_0678
PFAM: protein of unknown function UPF0153; KEGG: msl:Msil_1661 protein of unknown function UPF0153; Belongs to the UPF0260 family.
  
     0.485
Snov_0622
Electron-transferring-flavoprotein dehydrogenase; Accepts electrons from ETF and reduces ubiquinone.
 
     0.400
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.