STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_2489TIGRFAM: conserved hypothetical protein; KEGG: azc:AZC_3511 double-transmembrane region. (966 aa)    
Predicted Functional Partners:
Snov_2488
PFAM: protein of unknown function DUF58; KEGG: xau:Xaut_2947 hypothetical protein.
 
    0.952
Snov_2490
PFAM: protein of unknown function DUF1355; KEGG: xau:Xaut_2945 hypothetical protein.
 
     0.951
Snov_2487
PFAM: ATPase associated with various cellular activities AAA_3; KEGG: xau:Xaut_2948 ATPase.
 
     0.785
Snov_3408
KEGG: azc:AZC_4606 hypothetical protein.
  
    0.778
Snov_3091
PFAM: TPR repeat-containing protein; KEGG: rpb:RPB_1419 TPR repeat-containing protein.
  
     0.716
Snov_3909
PFAM: Protein of unknown function DUF2007; KEGG: rpa:RPA1041 hypothetical protein.
  
     0.712
Snov_3956
KEGG: xau:Xaut_1815 XRE family transcriptional regulator; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein.
  
   
 0.709
Snov_1503
PFAM: Domain of unknown function DUF1849; KEGG: azc:AZC_2317 hypothetical protein.
  
     0.678
Snov_0040
KEGG: rop:ROP_06080 hypothetical protein.
   
 
 0.667
Snov_0672
PFAM: protein of unknown function DUF1491; KEGG: azc:AZC_1095 hypothetical protein.
  
     0.626
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.