STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_2515PFAM: NUDIX hydrolase; KEGG: bja:blr2458 hypothetical protein. (166 aa)    
Predicted Functional Partners:
Snov_4000
PFAM: Protein of unknown function DUF2093; KEGG: azc:AZC_2384 hypothetical protein.
  
     0.654
Snov_2029
PFAM: Protein of unknown function DUF2327; KEGG: mes:Meso_1118 hypothetical protein.
 
    0.653
Snov_2587
KEGG: bja:blr2202 hypothetical protein.
  
     0.629
Snov_0676
PFAM: protein of unknown function DUF1214; KEGG: xau:Xaut_1410 hypothetical protein.
  
     0.613
Snov_2514
PFAM: metallophosphoesterase; KEGG: xau:Xaut_1367 metallophosphoesterase.
       0.607
Snov_4019
PFAM: conserved hypothetical protein; KEGG: xau:Xaut_1477 hypothetical protein.
 
     0.602
Snov_3945
KEGG: mrd:Mrad2831_3990 hypothetical protein.
  
     0.594
Snov_3060
PFAM: protein of unknown function DUF1465; KEGG: nwi:Nwi_2748 hypothetical protein.
  
     0.568
Snov_3700
KEGG: xau:Xaut_1938 hypothetical protein.
  
     0.560
Snov_3107
PFAM: protein of unknown function DUF1036; KEGG: azc:AZC_0444 hypothetical protein.
  
     0.555
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.