STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_2539PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: xau:Xaut_1639 ErfK/YbiS/YcfS/YnhG family protein. (210 aa)    
Predicted Functional Partners:
Snov_2538
KEGG: xau:Xaut_1640 extracellular solute-binding protein; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; Belongs to the bacterial solute-binding protein 3 family.
       0.624
xylA
TIGRFAM: xylose isomerase; KEGG: bra:BRADO2360 xylose isomerase; PFAM: Xylose isomerase domain protein TIM barrel; Belongs to the xylose isomerase family.
       0.473
xylB
Xylulokinase; KEGG: bid:Bind_3807 xylulokinase; TIGRFAM: xylulokinase; PFAM: Carbohydrate kinase, FGGY-like.
       0.473
Snov_3112
PFAM: protein of unknown function DUF882; KEGG: azc:AZC_0440 hypothetical protein.
 
     0.436
Snov_2297
PFAM: peptidase U6 penicillin-insensitive murein endopeptidase; KEGG: xau:Xaut_3098 penicillin-insensitive murein endopeptidase.
  
     0.426
Snov_2792
KEGG: xau:Xaut_0510 hypothetical protein.
 
  
 0.421
Snov_2542
KEGG: bbt:BBta_3990 LacI family transcription regulator; PFAM: regulatory protein LacI; SMART: regulatory protein LacI.
       0.413
Snov_1410
KEGG: xau:Xaut_1636 hypothetical protein.
  
     0.412
Snov_0583
PFAM: Invasion associated locus B family protein; KEGG: xau:Xaut_4649 invasion associated locus B family protein.
  
     0.409
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.