STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_2561PFAM: protein of unknown function DUF423; KEGG: xau:Xaut_1480 hypothetical protein. (125 aa)    
Predicted Functional Partners:
cobB
Cobyrinic acid a,c-diamide synthase; Catalyzes the ATP-dependent amidation of the two carboxylate groups at positions a and c of hydrogenobyrinate, using either L- glutamine or ammonia as the nitrogen source; Belongs to the CobB/CbiA family.
       0.757
Snov_2563
KEGG: rlt:Rleg2_6025 precorrin-4 C11-methyltransferase; TIGRFAM: precorrin-4 C11-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Belongs to the precorrin methyltransferase family.
       0.757
Snov_2564
PFAM: cobalamin (vitamin B12) biosynthesis CbiG protein; KEGG: xau:Xaut_3279 cobalamin biosynthesis protein G CbiG.
       0.757
Snov_2565
TIGRFAM: precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit; precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit; KEGG: rle:pRL110626 precorrin-6y c(5,15)-methyltransferase [decarboxylating] (precorrin-6 methyltransferase) (precorrin-6y methylase); PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase.
       0.757
Snov_1648
KEGG: azc:AZC_1545 hypothetical protein.
  
     0.753
Snov_2309
PFAM: NUDIX hydrolase; KEGG: azc:AZC_1067 hypothetical protein.
 
     0.750
Snov_3845
PFAM: protein of unknown function DUF1150; KEGG: azc:AZC_0347 hypothetical protein.
  
     0.719
Snov_2830
KEGG: xau:Xaut_2131 WD-40 repeat-containing protein.
 
     0.718
Snov_3005
PFAM: porin opacity type; KEGG: oca:OCAR_7162 porin, opacity type.
  
     0.704
Snov_2261
PFAM: Apolipoprotein A1/A4/E; KEGG: rpe:RPE_1474 hypothetical protein.
 
     0.670
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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