STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_2575PFAM: HupE/UreJ protein; KEGG: mpo:Mpop_4228 HupE/UreJ protein. (205 aa)    
Predicted Functional Partners:
Snov_2576
Adenosylcobinamide-phosphate guanylyltransferase; Catalyzes ATP-dependent phosphorylation of adenosylcobinamide and addition of GMP to adenosylcobinamide phosphate.
     
 0.761
Snov_2577
cob(I)alamin adenosyltransferase; Required for both de novo synthesis of the corrin ring for the assimilation of exogenous corrinoids. Participates in the adenosylation of a variety of incomplete and complete corrinoids.
     
 0.742
Snov_2574
Cobalt transporter, subunit CbtA; KEGG: mlo:mll1309 hypothetical protein; TIGRFAM: cobalt transporter, subunit CbtA; PFAM: Cobalt transporter subunit CbtA putative.
       0.605
Snov_2573
KEGG: xau:Xaut_3774 cobalt transporter, subunit CbtB; TIGRFAM: cobalt transporter, subunit CbtB; PFAM: Cobalt transporter subunit CbtB putative.
       0.561
Snov_3767
KEGG: vex:VEA_001054 hypothetical protein.
  
     0.414
ureA
TIGRFAM: urease, gamma subunit; urease, beta subunit; KEGG: azc:AZC_1764 urease beta subunit; PFAM: Urease gamma subunit region; Urease beta subunit; Belongs to the urease beta subunit family.
  
  
 0.406
Snov_2578
PFAM: TM2 domain containing protein; KEGG: ter:Tery_2399 TM2 domain-containing protein.
       0.403
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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