STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_2622PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: nar:Saro_1061 pyridoxal-5'-phosphate-dependent enzyme, beta subunit. (371 aa)    
Predicted Functional Partners:
Snov_2025
TIGRFAM: serine O-acetyltransferase; KEGG: rpc:RPC_3144 serine O-acetyltransferase; PFAM: serine acetyltransferase domain protein; transferase hexapeptide repeat containing protein.
  
 0.966
Snov_1167
PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; flavodoxin/nitric oxide synthase; PepSY-associated TM helix domain protein; Oxidoreductase FAD-binding domain protein; KEGG: pde:Pden_3290 oxidoreductase FAD/NAD(P)-binding subunit.
  
 
 0.959
Snov_1396
TIGRFAM: cystathionine beta-lyase; KEGG: azc:AZC_1584 cystathionine beta-lyase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein.
 
 0.956
metZ
O-succinylhomoserine sulfhydrylase; Catalyzes the formation of L-homocysteine from O-succinyl-L- homoserine (OSHS) and hydrogen sulfide.
 
 0.956
Snov_0405
PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; FAD-binding domain protein; Fe-S cluster domain protein; KEGG: azc:AZC_0680 sulfite reductase.
  
 
 0.941
Snov_3282
PFAM: nitrite and sulphite reductase 4Fe-4S region; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; KEGG: rpc:RPC_4013 nitrite and sulphite reductase 4Fe-4S region.
  
 
 0.934
Snov_3004
Phosphoserine aminotransferase; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine.
  
 
 0.912
Snov_1977
KEGG: mno:Mnod_4567 cytochrome c class I.
     
 0.907
Snov_0987
PFAM: protein of unknown function DUF442; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: bac:BamMC406_1667 hypothetical protein.
     
 0.905
Snov_2367
PFAM: aminotransferase class I and II; KEGG: xau:Xaut_2737 aminotransferase class I and II.
   
 0.904
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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