STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_2628KEGG: azc:AZC_0200 ATPase; PFAM: ABC transporter related; SMART: AAA ATPase. (232 aa)    
Predicted Functional Partners:
Snov_2626
PFAM: inner-membrane translocator; KEGG: azc:AZC_0198 branched chain amino acid ABC transporter; Belongs to the binding-protein-dependent transport system permease family.
  
 0.989
Snov_2396
PFAM: inner-membrane translocator; KEGG: oca:OCAR_6860 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
  
 0.961
Snov_2625
PFAM: inner-membrane translocator; KEGG: azc:AZC_0197 putative inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
  
 0.954
Snov_4222
PFAM: inner-membrane translocator; KEGG: bja:blr3355 ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.
  
 0.908
Snov_2627
KEGG: azc:AZC_0199 ABC branched-chain amino acid transporter; PFAM: ABC transporter related; SMART: AAA ATPase.
 
  
0.881
Snov_2624
PFAM: Extracellular ligand-binding receptor; KEGG: azc:AZC_0196 ABC-type branched-chain amino acid transport systems.
 
  
 0.878
Snov_2130
PFAM: inner-membrane translocator; KEGG: xau:Xaut_3901 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
  
 0.868
Snov_2929
PFAM: inner-membrane translocator; KEGG: xau:Xaut_1354 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
  
 0.845
Snov_2129
PFAM: inner-membrane translocator; KEGG: xau:Xaut_3900 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
  
 0.821
Snov_4084
PFAM: inner-membrane translocator; KEGG: mrd:Mrad2831_6015 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
  
 0.816
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.