STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_2630Vinylacetyl-CoA Delta-isomerase; KEGG: rop:ROP_14550 putative hydroxylase; PFAM: 4-hydroxyphenylacetate 3-hydroxylase. (506 aa)    
Predicted Functional Partners:
Snov_2632
PFAM: protein of unknown function DUF1028; KEGG: azc:AZC_0203 hypothetical protein.
 
     0.770
Snov_2631
PFAM: Endoribonuclease L-PSP; KEGG: azc:AZC_0202 L-PSP endoribonuclease.
 
     0.694
Snov_2633
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: azc:AZC_0204 LysR family transcriptional regulator.
 
     0.593
Snov_3269
KEGG: xau:Xaut_2671 putative sulfite:cytochrome c oxidoreductase subunit B.
  
     0.590
Snov_2625
PFAM: inner-membrane translocator; KEGG: azc:AZC_0197 putative inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
       0.449
Snov_2626
PFAM: inner-membrane translocator; KEGG: azc:AZC_0198 branched chain amino acid ABC transporter; Belongs to the binding-protein-dependent transport system permease family.
       0.449
Snov_2627
KEGG: azc:AZC_0199 ABC branched-chain amino acid transporter; PFAM: ABC transporter related; SMART: AAA ATPase.
       0.449
Snov_2628
KEGG: azc:AZC_0200 ATPase; PFAM: ABC transporter related; SMART: AAA ATPase.
       0.449
Snov_2629
KEGG: azc:AZC_0201 acetylornithine deacetylase; TIGRFAM: acetylornithine deacetylase (ArgE); PFAM: peptidase M20; peptidase dimerisation domain protein.
       0.443
Snov_0496
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: mlo:mlr5377 transcriptional regulator.
  
     0.422
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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