STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_2637PFAM: alanine racemase domain protein; KEGG: pde:Pden_3919 alanine racemase domain-containing protein. (391 aa)    
Predicted Functional Partners:
Snov_2636
KEGG: pde:Pden_3918 ornithine cyclodeaminase; PFAM: ornithine cyclodeaminase/mu-crystallin.
 
   
 0.956
Snov_2638
PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: mes:Meso_3309 pyridoxal-5'-phosphate-dependent enzyme, beta subunit.
 
   
 0.914
Snov_2639
PFAM: 6-phosphogluconate dehydrogenase NAD-binding; KEGG: azc:AZC_3490 2-hydroxy-3-oxopropionate reductase.
       0.613
Snov_2640
PFAM: extracellular solute-binding protein family 3; KEGG: rso:RS04698 periplasmic substrate binding ABC transporter protein.
       0.582
Snov_2982
KEGG: xau:Xaut_0481 transcriptional regulator IclR; PFAM: Transcriptional regulator IclR; regulatory protein IclR; SMART: regulatory protein IclR.
 
    0.477
Snov_2641
PFAM: integrase family protein; KEGG: mno:Mnod_7637 integrase family protein; Belongs to the 'phage' integrase family.
       0.422
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.