STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_2646PFAM: protein of unknown function DUF45; KEGG: pla:Plav_2343 hypothetical protein. (238 aa)    
Predicted Functional Partners:
Snov_2647
Type I site-specific deoxyribonuclease, HsdR family; Subunit R is required for both nuclease and ATPase activities, but not for modification.
   
 0.955
Snov_2653
KEGG: pla:Plav_2349 hypothetical protein.
 
    0.948
Snov_2650
PFAM: restriction modification system DNA specificity domain; KEGG: gox:GOX2568 type I restriction-modification enzyme S subunit.
 
    0.947
Snov_2652
KEGG: pla:Plav_2348 type I restriction-modification system, M subunit; TIGRFAM: type I restriction-modification system, M subunit; PFAM: N-6 DNA methylase.
 
     0.946
Snov_2651
KEGG: nwi:Nwi_3119 putative DNA-binding protein.
 
     0.869
Snov_2648
KEGG: pla:Plav_2345 hypothetical protein.
 
     0.827
Snov_2649
KEGG: nwi:Nwi_3121 hypothetical protein.
       0.760
Snov_4496
PFAM: protein of unknown function DUF45; KEGG: azc:AZC_4690 hypothetical protein.
  
     0.745
Snov_2654
KEGG: hypothetical protein.
       0.528
Snov_2655
KEGG: sil:SPO0629 ISSpo3, transposase.
       0.528
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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