STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_2670KEGG: azc:AZC_2885 outer membrane autotransporter barrel protein; TIGRFAM: outer membrane autotransporter barrel domain protein; autotransporter-associated beta strand repeat protein; PFAM: Autotransporter beta- domain protein. (2166 aa)    
Predicted Functional Partners:
Snov_2671
KEGG: mmi:MMAR_3302 hypothetical protein.
 
     0.802
Snov_3381
PFAM: Fusaric acid resistance protein conserved region; KEGG: oca:OCAR_4316 fusaric acid resistance protein conserved region.
  
     0.571
Snov_3641
KEGG: msl:Msil_3324 TonB-dependent siderophore receptor; TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor plug; Secretin/TonB short domain; TonB-dependent receptor.
  
 
 
 0.485
Snov_3311
PFAM: Disulphide bond formation protein DsbB; KEGG: azc:AZC_0989 putative transmembrane protein.
  
     0.470
Snov_2695
KEGG: azc:AZC_0448 hypothetical protein.
  
     0.434
Snov_4114
PFAM: Invasion associated locus B family protein; KEGG: azc:AZC_0717 putative invasion protein B.
 
     0.434
Snov_0311
PFAM: SH3 type 3 domain protein; KEGG: bxe:Bxe_A1493 hypothetical protein.
  
     0.415
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.