STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_2677PFAM: short-chain dehydrogenase/reductase SDR; KEGG: mva:Mvan_5759 short-chain dehydrogenase/reductase SDR. (308 aa)    
Predicted Functional Partners:
Snov_2939
PFAM: Epoxide hydrolase domain protein; alpha/beta hydrolase fold; KEGG: bur:Bcep18194_C7708 epoxide hydrolase.
  
   0.633
Snov_2681
PFAM: dTDP-4-dehydrorhamnose reductase; KEGG: bph:Bphy_5577 NmrA family protein.
 
   0.592
Snov_2678
PFAM: major facilitator superfamily MFS_1; KEGG: bja:blr0691 hypothetical protein.
       0.586
Snov_2679
PFAM: secretion protein HlyD family protein; KEGG: bra:BRADO6166 HlyD family secretion protein.
       0.586
Snov_1300
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: mav:MAV_3827 short chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
   0.524
Snov_2680
PFAM: Cupin 2 conserved barrel domain protein; KEGG: mno:Mnod_7642 cupin 2 conserved barrel domain protein.
       0.518
Snov_3457
PFAM: NAD-dependent epimerase/dehydratase; KEGG: gvi:glr1439 hypothetical protein.
  
   0.505
Snov_0379
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rle:RL1231 short chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
   0.468
Snov_2967
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rpd:RPD_4287 short-chain dehydrogenase/reductase SDR.
  
     0.439
Snov_0230
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ara:Arad_12307 short-chain alcohol dehydrogenase.
  
     0.412
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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