STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_2814PFAM: OmpW family protein; KEGG: mlo:mll6127 outer membrane protein. (240 aa)    
Predicted Functional Partners:
Snov_4465
KEGG: azc:AZC_4524 FixO protein; TIGRFAM: cytochrome c oxidase, cbb3-type, subunit II; PFAM: cytochrome C oxidase mono-heme subunit/FixO.
 
    0.828
Snov_4464
TIGRFAM: cytochrome c oxidase, cbb3-type, subunit I; KEGG: azc:AZC_4523 cytochrome c oxidase subunit 1-like protein; PFAM: cytochrome c oxidase subunit I; Belongs to the heme-copper respiratory oxidase family.
 
  
 0.777
Snov_0092
SMART: Elongator protein 3/MiaB/NifB; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; KEGG: mno:Mnod_2110 oxygen-independent coproporphyrinogen III oxidase; PFAM: HemN domain protein; Radical SAM domain protein; Belongs to the anaerobic coproporphyrinogen-III oxidase family.
 
  
 0.775
Snov_1151
SMART: Elongator protein 3/MiaB/NifB; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; KEGG: rde:RD1_1696 coproporphyrinogen III oxidase; PFAM: HemN domain protein; Radical SAM domain protein; Belongs to the anaerobic coproporphyrinogen-III oxidase family.
 
  
 0.772
Snov_4468
TIGRFAM: cytochrome c oxidase accessory protein CcoG; KEGG: xau:Xaut_0463 cytochrome c oxidase cbb3 type accessory protein FixG.
 
    0.769
Snov_1535
PFAM: protein of unknown function DUF344; KEGG: xau:Xaut_2307 hypothetical protein.
   
    0.585
Snov_3743
PFAM: protein of unknown function DUF344; KEGG: gbe:GbCGDNIH1_1622 polyphosphate kinase.
   
    0.585
Snov_4037
PFAM: protein of unknown function DUF344; KEGG: mes:Meso_0013 hypothetical protein.
   
    0.585
Snov_4467
Cytochrome c oxidase, cbb3-type, subunit III; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.
 
    0.559
Snov_3187
Phosphoketolase; KEGG: bid:Bind_2204 putative phosphoketolase; PFAM: Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase-like; D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase.
   
    0.509
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.