STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_2841PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpa:RPA0468 binding-protein-dependent transport systems inner membrane component. (263 aa)    
Predicted Functional Partners:
Snov_2840
KEGG: mlo:mll1293 ATP-binding protein of ABC transporter; PFAM: ABC transporter related; SMART: AAA ATPase.
  
 0.970
Snov_2839
PFAM: NMT1/THI5 like domain protein; KEGG: bbt:BBta_7482 ABC transporter periplasmic-binding protein.
 
    0.954
Snov_2843
PFAM: FAD linked oxidase domain protein; KEGG: mlo:mll1289 hypothetical protein.
 
     0.937
Snov_2842
PFAM: Amidohydrolase 3; KEGG: rlg:Rleg_4666 amidohydrolase 3.
    0.933
Snov_2844
PFAM: NAD(P)H dehydrogenase (quinone); KEGG: pla:Plav_0657 NAD(P)H dehydrogenase (quinone).
 
     0.893
Snov_0214
KEGG: ABC transporter related protein; PFAM: ABC transporter related; SMART: AAA ATPase.
  
 0.781
Snov_2838
PFAM: Endoribonuclease L-PSP; KEGG: dsh:Dshi_1385 endoribonuclease L-PSP.
 
    0.761
Snov_2837
PFAM: Creatininase; KEGG: msl:Msil_1161 creatininase.
 
     0.753
Snov_0632
PFAM: NMT1/THI5 like domain protein; KEGG: atc:AGR_L_3061 putative thiamine biosynthesis protein.
    0.717
Snov_1049
KEGG: tmz:Tmz1t_2850 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
  
 0.597
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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