STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_2879KEGG: azc:AZC_3832 hypothetical protein. (83 aa)    
Predicted Functional Partners:
Snov_2877
PFAM: Replication initiator protein A; KEGG: azc:AZC_3834 replication protein A.
 
     0.951
Snov_2880
KEGG: azc:AZC_3831 hypothetical protein.
 
     0.951
Snov_2881
PFAM: Peptidase S26, conserved region; KEGG: azc:AZC_3830 conjugal transfer protein.
 
     0.951
Snov_2878
PFAM: Cobyrinic acid ac-diamide synthase; KEGG: azc:AZC_3833 putative partition protein.
 
     0.949
Snov_2876
KEGG: azc:AZC_3835 hypothetical protein.
 
     0.946
Snov_2882
PFAM: Lytic transglycosylase catalytic; KEGG: azc:AZC_3829 lytic transglycosylase precursor.
 
     0.894
Snov_2883
KEGG: azc:AZC_3828 hypothetical protein.
 
     0.875
Snov_2885
KEGG: azc:AZC_3826 hypothetical protein.
 
     0.860
Snov_2875
PFAM: Protein of unknown function DUF2285; KEGG: xau:Xaut_0712 hypothetical protein.
 
     0.859
Snov_2884
PFAM: TRAG family protein; KEGG: azc:AZC_3827 conjugal transfer coupling protein TraG.
 
     0.852
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.