STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_3004Phosphoserine aminotransferase; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine. (391 aa)    
Predicted Functional Partners:
Snov_3003
TIGRFAM: D-3-phosphoglycerate dehydrogenase; KEGG: xau:Xaut_1202 D-3-phosphoglycerate dehydrogenase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; amino acid-binding ACT domain protein.
 
 0.998
Snov_0173
PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; KEGG: mrd:Mrad2831_4405 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding.
 
 0.993
Snov_3118
TIGRFAM: phosphoserine phosphatase SerB; HAD-superfamily hydrolase, subfamily IB (PSPase-like); KEGG: bra:BRADO5568 phosphoserine phosphatase (PSP) (O-phosphoserine phosphohydrolase) (PSPase); PFAM: Haloacid dehalogenase domain protein hydrolase.
 
 
 0.962
Snov_0592
TIGRFAM: threonine synthase; KEGG: azc:AZC_2239 threonine synthase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit.
  
 0.954
Snov_0299
KEGG: azc:AZC_0709 cysteine synthase K/M; TIGRFAM: cysteine synthase A; cysteine synthase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit.
  
 
 0.912
Snov_1403
PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: xau:Xaut_4677 pyridoxal-5'-phosphate-dependent protein beta subunit.
  
 
 0.912
Snov_2003
KEGG: mlo:mlr4651 cysteine synthase; TIGRFAM: cysteine synthase A; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit.
  
 
 0.912
Snov_2622
PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: nar:Saro_1061 pyridoxal-5'-phosphate-dependent enzyme, beta subunit.
  
 
 0.912
Snov_2887
PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: nar:Saro_1061 pyridoxal-5'-phosphate-dependent enzyme, beta subunit.
  
 
 0.912
Snov_4229
PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: hoh:Hoch_3415 pyridoxal-5'-phosphate-dependent protein beta subunit.
  
 
 0.912
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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