STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_3005PFAM: porin opacity type; KEGG: oca:OCAR_7162 porin, opacity type. (222 aa)    
Predicted Functional Partners:
Snov_3068
KEGG: nha:Nham_3530 hypothetical protein.
  
     0.745
Snov_3845
PFAM: protein of unknown function DUF1150; KEGG: azc:AZC_0347 hypothetical protein.
  
     0.735
Snov_3945
KEGG: mrd:Mrad2831_3990 hypothetical protein.
  
     0.720
Snov_1494
PFAM: Phasin; KEGG: xau:Xaut_4538 hypothetical protein.
  
     0.704
Snov_2561
PFAM: protein of unknown function DUF423; KEGG: xau:Xaut_1480 hypothetical protein.
  
     0.704
Snov_1410
KEGG: xau:Xaut_1636 hypothetical protein.
  
     0.699
Snov_3994
KEGG: nwi:Nwi_2561 hypothetical protein.
  
     0.698
Snov_0676
PFAM: protein of unknown function DUF1214; KEGG: xau:Xaut_1410 hypothetical protein.
  
     0.689
Snov_2991
KEGG: azc:AZC_4671 hypothetical protein.
  
   
 0.689
Snov_1699
PFAM: Invasion associated locus B family protein; KEGG: xau:Xaut_3868 invasion associated locus B family protein.
 
     0.684
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.