STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_3159PFAM: Extensin family protein; KEGG: azc:AZC_4252 hypothetical protein. (480 aa)    
Predicted Functional Partners:
Snov_2826
PFAM: protein of unknown function DUF1007; KEGG: xau:Xaut_0392 hypothetical protein.
  
     0.650
Snov_1622
PFAM: Lytic transglycosylase catalytic; Tetratricopeptide TPR_4; KEGG: xau:Xaut_3828 lytic transglycosylase catalytic.
  
     0.592
Snov_0668
KEGG: rpc:RPC_1776 hypothetical protein.
  
     0.527
Snov_3160
NAD(P)(+) transhydrogenase (AB-specific); KEGG: azc:AZC_0432 NAD(P) transhydrogenase beta subunit precursor; PFAM: NAD(P) transhydrogenase beta subunit.
       0.510
Snov_1621
PFAM: OmpA/MotB domain protein; KEGG: xau:Xaut_3825 OmpA/MotB domain-containing protein.
 
     0.509
Snov_3161
KEGG: azc:AZC_0431 putative NAD(P) transhydrogenase subunit alpha part 2 transmembrane protein.
       0.507
Snov_1081
KEGG: azc:AZC_4306 hypothetical protein.
  
     0.504
Snov_0349
KEGG: xau:Xaut_0067 hypothetical protein.
  
     0.457
Snov_0915
KEGG: azc:AZC_1780 hypothetical protein.
  
     0.449
Snov_2442
PFAM: ribonuclease T2; KEGG: xau:Xaut_2731 ribonuclease T2; Belongs to the RNase T2 family.
  
     0.444
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.