STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_3228KEGG: rhi:NGR_b04790 putative transcriptional regulator protein, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain. (176 aa)    
Predicted Functional Partners:
Snov_0391
KEGG: oan:Oant_2921 AraC family transcriptional regulator; PFAM: helix-turn-helix- domain containing protein AraC type; ThiJ/PfpI domain protein; SMART: Helix-turn-helix, AraC domain.
 
 
 0.769
Snov_3019
Transcriptional regulator, AraC family; KEGG: azc:AZC_1175 transcriptional regulator; PFAM: helix-turn-helix- domain containing protein AraC type; ThiJ/PfpI domain protein; SMART: Helix-turn-helix, AraC domain.
 
 
 0.754
Snov_3777
KEGG: mno:Mnod_1034 transcriptional regulator, AraC family; PFAM: ThiJ/PfpI domain protein; helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain.
 
 
 0.739
Snov_3762
KEGG: bac:BamMC406_3471 AraC family transcriptional regulator; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain.
  
     0.671
Snov_2760
KEGG: pmy:Pmen_3214 AraC family transcriptional regulator; PFAM: AraC-type transcriptional regulator domain protein; helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain.
  
     0.470
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.