STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_3232PFAM: inner-membrane translocator; KEGG: rpt:Rpal_2664 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family. (290 aa)    
Predicted Functional Partners:
Snov_2396
PFAM: inner-membrane translocator; KEGG: oca:OCAR_6860 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
  
 0.974
Snov_3233
PFAM: inner-membrane translocator; KEGG: azc:AZC_3887 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
  
 0.960
Snov_3234
KEGG: azc:AZC_3886 ATPase; PFAM: ABC transporter related; SMART: AAA ATPase.
  
 0.952
Snov_3235
ABC transporter related protein; KEGG: rpa:RPA2414 putative UreA/short-chain amide transport system ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase.
 
  
 0.939
Snov_3231
KEGG: azc:AZC_3889 putative UreA/short-chain amide transport system substrate-binding protein precursor; TIGRFAM: urea ABC transporter, substrate-binding protein; PFAM: Extracellular ligand-binding receptor.
 
  
 0.917
Snov_2929
PFAM: inner-membrane translocator; KEGG: xau:Xaut_1354 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
  
 0.910
Snov_3229
KEGG: bbt:BBta_3200 putative aliphatic amidase expression-regulating protein, AmiC.
 
  
 0.889
Snov_1385
KEGG: rpt:Rpal_4189 UreA ABC transporter, permease protein UrtC; TIGRFAM: urea ABC transporter, permease protein UrtC; PFAM: inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
  
 0.856
Snov_4137
KEGG: tmz:Tmz1t_3933 UreA ABC transporter, permease protein UrtC; TIGRFAM: urea ABC transporter, permease protein UrtC; PFAM: inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
  
 0.855
Snov_2626
PFAM: inner-membrane translocator; KEGG: azc:AZC_0198 branched chain amino acid ABC transporter; Belongs to the binding-protein-dependent transport system permease family.
  
 0.852
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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