STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_3311PFAM: Disulphide bond formation protein DsbB; KEGG: azc:AZC_0989 putative transmembrane protein. (199 aa)    
Predicted Functional Partners:
Snov_3310
KEGG: azc:AZC_0990 putative transmembrane protein.
       0.768
Snov_2695
KEGG: azc:AZC_0448 hypothetical protein.
  
     0.739
Snov_0791
KEGG: msl:Msil_2438 hypothetical protein.
  
     0.690
Snov_2829
KEGG: azc:AZC_0117 outer membrane autotransporter barrel precursor; TIGRFAM: outer membrane autotransporter barrel domain protein; PFAM: Autotransporter beta- domain protein.
  
     0.511
Snov_2670
KEGG: azc:AZC_2885 outer membrane autotransporter barrel protein; TIGRFAM: outer membrane autotransporter barrel domain protein; autotransporter-associated beta strand repeat protein; PFAM: Autotransporter beta- domain protein.
  
     0.470
Snov_3147
KEGG: xau:Xaut_4732 beta-lactamase domain-containing protein.
  
     0.465
Snov_0438
KEGG: msl:Msil_0235 hypothetical protein.
  
     0.454
adc
Acetoacetate decarboxylase; Catalyzes the conversion of acetoacetate to acetone and carbon dioxide; Belongs to the ADC family.
  
     0.453
Snov_3221
Hypothetical protein; KEGG: hba:Hbal_1797 O-antigen polymerase.
  
     0.445
Snov_3226
PFAM: heat shock protein DnaJ domain protein; KEGG: eba:ebA6795 hypothetical protein.
  
     0.444
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.