STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_3368TIGRFAM: succinic semialdehyde dehydrogenase; KEGG: mes:Meso_1323 succinate semialdehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase; Belongs to the aldehyde dehydrogenase family. (480 aa)    
Predicted Functional Partners:
Snov_3495
PFAM: iron-containing alcohol dehydrogenase; KEGG: reu:Reut_C6426 iron-containing alcohol dehydrogenase.
 
 0.924
Snov_1616
TIGRFAM: succinate CoA transferase; KEGG: azc:AZC_3728 acetyl-CoA hydrolase; PFAM: acetyl-CoA hydrolase/transferase.
  
 
 0.907
Snov_1728
KEGG: azc:AZC_0555 2-dehydro-3-deoxyglucarate aldolase; PFAM: HpcH/HpaI aldolase; Belongs to the HpcH/HpaI aldolase family.
  
 
 0.905
Snov_3241
KEGG: azc:AZC_0555 2-dehydro-3-deoxyglucarate aldolase; PFAM: HpcH/HpaI aldolase; Belongs to the HpcH/HpaI aldolase family.
  
 
 0.905
Snov_0274
PFAM: aminotransferase class-III; KEGG: mno:Mnod_5513 aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
   
 0.902
Snov_1569
PFAM: aminotransferase class-III; KEGG: bbt:BBta_1928 aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
   
 0.902
Snov_1825
TIGRFAM: citrate synthase I; KEGG: xau:Xaut_4425 citrate synthase I; PFAM: Citrate synthase; Belongs to the citrate synthase family.
  
 0.877
pckA
Phosphoenolpyruvate carboxykinase (ATP); Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA.
  
 
 0.873
Snov_3300
TIGRFAM: 2-oxoglutarate dehydrogenase, E1 subunit; KEGG: xau:Xaut_0156 2-oxoglutarate dehydrogenase E1 component; PFAM: Transketolase central region; dehydrogenase E1 component.
   
 
 0.826
fumC
Fumarate hydratase, class II; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.
   
 0.822
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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