STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_3374PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ttu:TERTU_3481 ABC transporter, permease protein. (272 aa)    
Predicted Functional Partners:
Snov_3375
KEGG: bra:BRADO6796 putative ABC transporter, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase.
  
 0.963
Snov_3373
TIGRFAM: ABC transporter periplasmic binding protein, urea carboxylase region; KEGG: bra:BRADO6798 putative ABC transporter, substrate-binding protein.
 
    0.896
Snov_3376
KEGG: msm:MSMEG_6734 dibenzothiophene desulfurization enzyme A.
  
    0.800
Snov_3775
KEGG: mpo:Mpop_3899 allophanate hydrolase; TIGRFAM: allophanate hydrolase; PFAM: Amidase.
 
     0.721
Snov_0856
TIGRFAM: taurine ABC transporter, periplasmic binding protein; PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: mlo:mlr4517 taurine transport system periplasmic protein; SMART: extracellular solute-binding protein family 3.
  
 0.701
Snov_0222
ABC transporter related protein; KEGG: rci:RCIX444 putative ABC-type sulfonate import system, ATPase component; PFAM: ABC transporter related; SMART: AAA ATPase.
  
 0.628
Snov_4276
KEGG: met:M446_3499 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
  
 0.614
Snov_0868
KEGG: bvi:Bcep1808_4968 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
  
 0.612
Snov_0401
TIGRFAM: nitrate ABC transporter, ATPase subunits C and D; PFAM: ABC transporter related; KEGG: azc:AZC_0684 nitrate transport ATP-binding subunits C and D protein; SMART: AAA ATPase.
  
 0.601
rutF
Flavin reductase domain protein FMN-binding protein; Catalyzes the reduction of FMN to FMNH2 which is used to reduce pyrimidine by RutA via the Rut pathway; Belongs to the non-flavoprotein flavin reductase family. RutF subfamily.
  
    0.588
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.