STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_3393PFAM: protein of unknown function DUF1332; KEGG: xau:Xaut_2028 hypothetical protein. (152 aa)    
Predicted Functional Partners:
Snov_3392
PFAM: glutamine amidotransferase class-I; KEGG: mno:Mnod_0664 glutamine amidotransferase class-I.
 
     0.612
Snov_3700
KEGG: xau:Xaut_1938 hypothetical protein.
 
     0.525
Snov_3694
PFAM: peptidase M48 Ste24p; KEGG: xau:Xaut_2231 peptidase M48 Ste24p.
  
     0.510
Snov_0612
Phasin; KEGG: azc:AZC_2250 hypothetical protein; TIGRFAM: phasin; PFAM: Phasin.
  
     0.483
Snov_1338
KEGG: xau:Xaut_4196 hypothetical protein.
  
     0.452
Snov_0077
KEGG: nha:Nham_0271 hypothetical protein.
  
     0.451
Snov_0583
PFAM: Invasion associated locus B family protein; KEGG: xau:Xaut_4649 invasion associated locus B family protein.
  
     0.443
Snov_1809
KEGG: azc:AZC_3066 hypothetical protein.
  
     0.414
Snov_3394
KEGG: rme:Rmet_4357 GntR family transcriptional regulator; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH.
       0.401
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.