STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_3513PFAM: extracellular solute-binding protein family 1; KEGG: rsk:RSKD131_3683 extracellular solute-binding protein, family 1 precursor. (346 aa)    
Predicted Functional Partners:
Snov_3516
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rsp:RSP_3518 ABC polyamine/opine transporter, inner membrane subunit.
 
  
 0.910
Snov_3515
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rsh:Rsph17029_3162 binding-protein-dependent transport systems inner membrane component.
 
  
 0.876
Snov_2042
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rhi:NGR_b19760 ABC transporter permease protein.
 
  
 0.820
Snov_3197
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rsk:RSKD131_3686 binding-protein-dependent transport systems inner membrane component precursor.
 
  
 0.819
Snov_3196
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rsk:RSKD131_3685 binding-protein-dependent transport systems inner membrane component precursor.
 
  
 0.769
potA-4
Spermidine/putrescine ABC transporter ATPase subunit; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.
 
    0.741
Snov_2890
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bmj:BMULJ_05417 spermidine/putrescine transport system permease protein.
 
  
 0.695
Snov_0105
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: avi:Avi_6277 ABC transporter membrane spanning protein (spermidine/putrescine).
 
  
 0.670
Snov_4163
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rru:Rru_A2046 binding-protein dependent transport system inner membrane protein.
 
  
 0.658
Snov_2889
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pde:Pden_5050 binding-protein-dependent transport systems inner membrane component.
 
    0.655
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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