STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_3544PFAM: [2Fe-2S]-binding domain protein; ferredoxin; KEGG: bpy:Bphyt_4959 (2Fe-2S)-binding domain protein. (158 aa)    
Predicted Functional Partners:
Snov_1560
PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; KEGG: sme:SM_b20132 putative dehydrogenase.
 
 0.984
Snov_3543
PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: msl:Msil_2460 aldehyde oxidase and xanthine dehydrogenase molybdopterin binding.
 
 0.984
Snov_4237
PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; KEGG: bja:blr3350 carbon monoxide dehydrogenase large chain.
 
 0.960
Snov_3370
PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: mpo:Mpop_0850 aldehyde oxidase and xanthine dehydrogenase molybdopterin binding.
 
 0.932
Snov_1976
PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: lch:Lcho_0067 aldehyde oxidase and xanthine dehydrogenase molybdopterin binding.
 
 0.920
Snov_0396
PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; KEGG: azc:AZC_1400 putative oxidoreductase.
 
 0.901
Snov_3542
KEGG: cak:Caul_0697 hypothetical protein.
 
     0.809
Snov_2123
KEGG: azc:AZC_2930 putative xanthine and CO dehydrogenases maturation factor.
 
  
 0.777
Snov_2122
PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; KEGG: rpt:Rpal_4320 4-diphosphocytidyl-2C-methyl-D-erythritol synthase.
 
  
 0.724
Snov_1562
PFAM: molybdopterin dehydrogenase FAD-binding; KEGG: met:M446_0552 molybdopterin dehydrogenase FAD-binding.
 
 0.692
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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