STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_3570KEGG: bph:Bphy_5108 polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component. (223 aa)    
Predicted Functional Partners:
Snov_3571
KEGG: bxe:Bxe_B1822 ABC amino acid transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase.
 0.995
Snov_3126
KEGG: smd:Smed_2979 extracellular solute-binding protein; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; ionotropic glutamate receptor.
   0.979
Snov_3555
KEGG: rle:RL4634 putative solute-binding component of ABC transporter; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; Belongs to the bacterial solute-binding protein 3 family.
   0.973
Snov_1659
Extracellular solute-binding protein family 3; KEGG: sme:SMc00140 putative amino-acid binding periplasmic protein; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; ionotropic glutamate receptor.
   0.971
Snov_3569
KEGG: bxe:Bxe_B1820 ABC amino acid transporter, inner membrane subunit; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component.
 
  
 
0.954
Snov_0883
Extracellular solute-binding protein family 3; KEGG: rhi:NGR_c17180 putative solute-binding component of ABC transporter; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; ionotropic glutamate receptor.
   0.929
Snov_3572
Extracellular solute-binding protein family 3; KEGG: avi:Avi_5967 ABC-type amino acid transport/signal transduction periplasmic protein; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3.
   0.907
Snov_0177
KEGG: ara:Arad_7980 amino acid ABC transporter; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3.
   0.856
Snov_0180
KEGG: mrd:Mrad2831_5811 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
 
 0.853
Snov_0382
KEGG: bxe:Bxe_A2431 polar amino acid ABC transporter ATPase; PFAM: ABC transporter related; SMART: AAA ATPase.
 
 0.845
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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