STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_3603PFAM: cyclase family protein; KEGG: mex:Mext_3370 cyclase family protein. (231 aa)    
Predicted Functional Partners:
Snov_3604
Amidase; KEGG: xau:Xaut_4065 amidase; PFAM: Amidase.
 
     0.725
Snov_3599
PFAM: Extracellular ligand-binding receptor; KEGG: xau:Xaut_4060 extracellular ligand-binding receptor.
 
     0.709
Snov_3601
KEGG: xau:Xaut_4062 ABC transporter related; PFAM: ABC transporter related; inner-membrane translocator; SMART: AAA ATPase; Belongs to the binding-protein-dependent transport system permease family.
 
     0.701
Snov_3600
PFAM: inner-membrane translocator; KEGG: xau:Xaut_4061 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
     0.654
Snov_3602
KEGG: xau:Xaut_4063 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
  
    0.606
Snov_3605
PFAM: CMP/dCMP deaminase zinc-binding; KEGG: bba:Bd0085 cytidine/deoxycytidylate deaminase family protein.
       0.597
Snov_0225
PFAM: protein of unknown function DUF849; KEGG: mlo:mll1033 hypothetical protein.
 
    0.499
Snov_3606
PFAM: extracellular solute-binding protein family 1; KEGG: ppw:PputW619_3274 extracellular solute-binding protein.
       0.437
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.