STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_3608PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pde:Pden_1023 binding-protein-dependent transport systems inner membrane component. (267 aa)    
Predicted Functional Partners:
Snov_0936
Extracellular solute-binding protein family 1; Required for the activity of the bacterial periplasmic transport system of putrescine; Belongs to the bacterial solute-binding protein PotD/PotF family.
  
 0.980
Snov_4122
Extracellular solute-binding protein family 1; Required for the activity of the bacterial periplasmic transport system of putrescine; Belongs to the bacterial solute-binding protein PotD/PotF family.
  
 0.980
Snov_3607
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dsh:Dshi_2122 binding-protein-dependent transport systems inner membrane component.
  
 0.967
Snov_3515
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rsh:Rsph17029_3162 binding-protein-dependent transport systems inner membrane component.
  
 0.951
Snov_3609
KEGG: ppw:PputW619_3271 ABC transporter related; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
  
 0.944
Snov_0335
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: azc:AZC_3518 spermidine/putrescine ABC transporter permease component I protein.
  
 0.940
Snov_3196
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rsk:RSKD131_3685 binding-protein-dependent transport systems inner membrane component precursor.
  
 0.940
Snov_4120
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mlo:mll2888 ABC transporter, permease.
  
 0.934
Snov_3606
PFAM: extracellular solute-binding protein family 1; KEGG: ppw:PputW619_3274 extracellular solute-binding protein.
 
  
 0.930
Snov_4163
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rru:Rru_A2046 binding-protein dependent transport system inner membrane protein.
  
 0.898
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.