STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snov_3670Inner-membrane translocator; KEGG: mlo:mll7018 ribose ABC transporter, ATP-binding protein; PFAM: inner-membrane translocator; ABC transporter related; SMART: AAA ATPase; Belongs to the binding-protein-dependent transport system permease family. (845 aa)    
Predicted Functional Partners:
Snov_3671
KEGG: mlo:mll7019 hypothetical protein.
 
 0.997
Snov_3669
PFAM: inner-membrane translocator; KEGG: mlo:mll7017 ribose ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.
0.980
Snov_3556
KEGG: pde:Pden_4771 ABC ribose transporter, periplasmic solute-binding protein.
 
 0.979
Snov_1564
PFAM: inner-membrane translocator; KEGG: sit:TM1040_3252 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 0.969
Snov_3557
PFAM: inner-membrane translocator; KEGG: rsq:Rsph17025_2684 monosaccharide-transporting ATPase; Belongs to the binding-protein-dependent transport system permease family.
 0.963
Snov_1565
ABC transporter related protein; KEGG: rhi:NGR_b01270 ribose import ATP-binding protein RbsA; PFAM: ABC transporter related; SMART: AAA ATPase.
 
0.954
Snov_3558
KEGG: pde:Pden_4769 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
 
0.954
Snov_1566
PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: sit:TM1040_3254 TMAO reductase system periplasmic protein TorT.
 
 
 0.905
Snov_0124
PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: bja:blr3200 ABC transporter sugar-binding protein.
 
 0.898
Snov_2542
KEGG: bbt:BBta_3990 LacI family transcription regulator; PFAM: regulatory protein LacI; SMART: regulatory protein LacI.
  
 
 0.874
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.